ICALEPCS2023 - List of Authors (Smith, W.)

Paper	Title	Page
MO2AO04	Experimental Data Taking and Management: The Upgrade Process at BESSY II and HZB	84
	R. Müller, H. Görzig, G. Hartmann, K. Kiefer, R. Ovsyannikov, W. Smith, S. Vadilonga, J. Viefhaus HZB, Berlin, Germany D.B. Allan BNL, Upton, New York, USA
	The endeavor of modernizing science data acquisition at BESSY II started 2019 [] Significant achievements have been made: the Bluesky software ecosystem is now accepted framework for data acquisition, flow control and automation. It is operational at an increasing number of HZB beamlines, endstations and instruments. Participation in the global Bluesky collaboration is an extremely empowering experience. Promoting FAIR data principles at all levels developed a unifying momentum, providing guidance at less obvious design considerations. Now a joint demonstrator project of DESY, HZB, HZDR and KIT, named ROCK-IT (Remote Operando Controlled Knowledge-driven, IT-based), aims at portable solutions for fully automated measurements in the catalysis area of material science and is spearheading common developments. Foundation there is laid by Bluesky data acquisition, AI/ML support and analysis, modular sample environment, robotics and FAIR data handling. This paper puts present HZB controls projects as well as detailed HZB contributions to this conference [] into context. It outlines strategies providing appropriate digital tools at a successor 4th generation light source BESSY III. [] R. Müller, et.al. https://doi.org/10.18429/JACoW-ICALEPCS2019-MOCPL02 [**] covering digital twins, Bluesky, sample environment, motion control, remote access, meta data
	Slides MO2AO04 [2.522 MB]
DOI •	reference for this paper ※ doi:10.18429/JACoW-ICALEPCS2023-MO2AO04
About •	Received ※ 05 October 2023 — Revised ※ 26 October 2023 — Accepted ※ 14 November 2023 — Issued ※ 16 December 2023
Cite •	reference for this paper using ※ BibTeX, ※ LaTeX, ※ Text/Word, ※ RIS, ※ EndNote (xml)

TUPDP014	Bluesky Web Client at Bessy II	518
	H.L. He, G. Preuß, S.S. Sachse, W. Smith HZB, Berlin, Germany R. Ovsyannikov BESSY GmbH, Berlin, Germany
	Funding: Helmholtz-Zentrum Berlin Considering the existing Bluesky control framework at BESSY II, a web client with React based on Bluesky HTTP Server is being developed. We hope to achieve a cross-platform and cross-device system to realize remote control and monitoring of experiments. The current functions of the system are monitoring of the Bluesky Queue Server status, control over a Bluesky Run Engine environment, browsing of Queue Server history and editing and running of Bluesky plans. Challenges around the presentation of live data are explored. This work builds on that of NSLS II who created a React based web interface and implements a tool for BESSY II.
	Poster TUPDP014 [0.311 MB]
DOI •	reference for this paper ※ doi:10.18429/JACoW-ICALEPCS2023-TUPDP014
About •	Received ※ 29 September 2023 — Accepted ※ 01 December 2023 — Issued ※ 11 December 2023
Cite •	reference for this paper using ※ BibTeX, ※ LaTeX, ※ Text/Word, ※ RIS, ※ EndNote (xml)

THMBCMO10	SECoP Integration for the Ophyd Hardware Abstraction Layer	1212
	P. Wegmann, K. Kiefer, O. Mannix, L. Rossa, W. Smith HZB, Berlin, Germany E. Faulhaber MLZ, Garching, Germany M. Zolliker PSI, Villigen PSI, Switzerland
	At the core of the Bluesky experimental control ecosystem the ophyd hardware abstraction, a consistent high-level interface layer, is extremely powerful for complex device integration. It introduces the device data model to EPICS and eases integration of alien control protocols. This paper focuses on the integration of the Sample Environment Communication Protocol (SECoP)* into the ophyd layer, enabling seamless incorporation of sample environment hardware into beamline experiments at photon and neutron sources. The SECoP integration was designed to have a simple interface and provide plug-and-play functionality while preserving all metadata and structural information about the controlled hardware. Leveraging the self-describing characteristics of SECoP, automatic generation and configuration of ophyd devices is facilitated upon connecting to a Sample Environment Control (SEC) node. This work builds upon a modified SECoP-client provided by the Frappy framework*, intended for programming SEC nodes with a SECoP interface. This paper presents an overview of the architecture and implementation of the ophyd-SECoP integration and includes examples for better understanding. Klaus Kiefer et al. "An introduction to SECoP - the sample environment communication protocol". **Markus Zolliker and Enrico Faulhaber url: https://github.com/sampleenvironment/Frappy.
	Slides THMBCMO10 [0.596 MB]
	Poster THMBCMO10 [0.809 MB]
DOI •	reference for this paper ※ doi:10.18429/JACoW-ICALEPCS2023-THMBCMO10
About •	Received ※ 05 October 2023 — Accepted ※ 08 December 2023 — Issued ※ 14 December 2023
Cite •	reference for this paper using ※ BibTeX, ※ LaTeX, ※ Text/Word, ※ RIS, ※ EndNote (xml)

THMBCMO18	Advancements in Beamline Digital Twin at BESSYII	1236
	S. Vadilonga, G. Günther, S. Kazarski, R. Ovsyannikov, S.S. Sachse, W. Smith HZB, Berlin, Germany
	This presentation reports on the status of beamline digital twins at BESSY II. To provide a comprehensive beamline simulation experience we have leveraged BESSY II’s x-ray tracing program, RAY-UI[], widely used for beamline design and commissioning and best adapted to the requirements of our soft X-ray source BESSY II. We created a Python API, RayPyNG, capable to convert our library of beamline configuration files produced by RAY-UI into Python objects[]. This allows to embed beamline simulation into Bluesky[], our experimental controls software ecosystem. All optical elements are mapped directly into the Bluesky device abstraction (Ophyd). Thus beamline operators can run simulations and operate real systems by a common interface, allowing to directly compare theory predictions with real-time results[*]. We will discuss the relevance of this digital twin for process tuning in terms of enhanced beamline performance and streamlined operations. We will shortly discuss alternatives to RAY-UI like other software packages and ML/AI surrogate models. []https://doi.org/10.1063/1.5084665 []https://raypyng.readthedocs.io/ []https://doi.org/10.1080/08940886.2019.1608121 [***]https://raypyng-bluesky.readthedocs.io/
	Slides THMBCMO18 [0.333 MB]
DOI •	reference for this paper ※ doi:10.18429/JACoW-ICALEPCS2023-THMBCMO18
About •	Received ※ 06 October 2023 — Accepted ※ 11 December 2023 — Issued ※ 16 December 2023
Cite •	reference for this paper using ※ BibTeX, ※ LaTeX, ※ Text/Word, ※ RIS, ※ EndNote (xml)

THMBCMO30	Using ArUco Codes for Beam Spot Analysis with a Camera at an Unknown Position	1264
	W. Smith, M. Arce, M. Bär, M. Gorgoi, C.E. Jimenez, I. Rudolph HZB, Berlin, Germany
	Measuring the focus size and position of an X-ray beam at the interaction point in an synchrotron beamline is a critical parameter that is used when planning experiments and when determining if a beamline is achieving it’s design goals. Commonly this is performed using a dedicated UHV "focus chamber" comprising a fluorescent screen at an adjustable calibrated distance from the mounting flange and a camera on the same axis as the beam. Having to install a large piece of hardware makes regular checks prohibitively time consuming. A fluorescent screen can be mounted to a sample holder and moved using a manipulator in the existing end-station and a camera pointed at this to show a warped version of the beam spot at the interaction point. The warping of the image is caused by the relative position of the camera to the screen, which is difficult to determine and can change and come out of camera focus as the manipulator is moved. This paper proposes a solution to this problem using ArUco codes printed onto a fluorescent screen which provide a reference in the image. Reference points from the ArUco codes are recovered from an image and used to correct warping and provide a calibration in real time using an EPICS AreaDetector plugin using OpenCV. This analysis is presently in commissioning and aims to characterise the beam spots at the dual-colour beamline of the EMIL laboratory at BESSY II.
	Slides THMBCMO30 [4.674 MB]
	Poster THMBCMO30 [0.942 MB]
DOI •	reference for this paper ※ doi:10.18429/JACoW-ICALEPCS2023-THMBCMO30
About •	Received ※ 16 September 2023 — Revised ※ 10 October 2023 — Accepted ※ 13 October 2023 — Issued ※ 22 October 2023
Cite •	reference for this paper using ※ BibTeX, ※ LaTeX, ※ Text/Word, ※ RIS, ※ EndNote (xml)

Paper

Title

Page

Experimental Data Taking and Management: The Upgrade Process at BESSY II and HZB

84

R. Müller, H. Görzig, G. Hartmann, K. Kiefer, R. Ovsyannikov, W. Smith, S. Vadilonga, J. Viefhaus
HZB, Berlin, Germany
D.B. Allan
BNL, Upton, New York, USA

The endeavor of modernizing science data acquisition at BESSY II started 2019 [*] Significant achievements have been made: the Bluesky software ecosystem is now accepted framework for data acquisition, flow control and automation. It is operational at an increasing number of HZB beamlines, endstations and instruments. Participation in the global Bluesky collaboration is an extremely empowering experience. Promoting FAIR data principles at all levels developed a unifying momentum, providing guidance at less obvious design considerations. Now a joint demonstrator project of DESY, HZB, HZDR and KIT, named ROCK-IT (Remote Operando Controlled Knowledge-driven, IT-based), aims at portable solutions for fully automated measurements in the catalysis area of material science and is spearheading common developments. Foundation there is laid by Bluesky data acquisition, AI/ML support and analysis, modular sample environment, robotics and FAIR data handling. This paper puts present HZB controls projects as well as detailed HZB contributions to this conference [**] into context. It outlines strategies providing appropriate digital tools at a successor 4th generation light source BESSY III.
[*] R. Müller, et.al. https://doi.org/10.18429/JACoW-ICALEPCS2019-MOCPL02
[**] covering digital twins, Bluesky, sample environment, motion control, remote access, meta data

Slides MO2AO04 [2.522 MB]

DOI •

reference for this paper ※ doi:10.18429/JACoW-ICALEPCS2023-MO2AO04

About •

Received ※ 05 October 2023 — Revised ※ 26 October 2023 — Accepted ※ 14 November 2023 — Issued ※ 16 December 2023

Cite •

reference for this paper using ※ BibTeX, ※ LaTeX, ※ Text/Word, ※ RIS, ※ EndNote (xml)

TUPDP014

Bluesky Web Client at Bessy II

518

H.L. He, G. Preuß, S.S. Sachse, W. Smith
HZB, Berlin, Germany
R. Ovsyannikov
BESSY GmbH, Berlin, Germany

Funding: Helmholtz-Zentrum Berlin
Considering the existing Bluesky control framework at BESSY II, a web client with React based on Bluesky HTTP Server is being developed. We hope to achieve a cross-platform and cross-device system to realize remote control and monitoring of experiments. The current functions of the system are monitoring of the Bluesky Queue Server status, control over a Bluesky Run Engine environment, browsing of Queue Server history and editing and running of Bluesky plans. Challenges around the presentation of live data are explored. This work builds on that of NSLS II who created a React based web interface and implements a tool for BESSY II.

Poster TUPDP014 [0.311 MB]

DOI •

reference for this paper ※ doi:10.18429/JACoW-ICALEPCS2023-TUPDP014

About •

Received ※ 29 September 2023 — Accepted ※ 01 December 2023 — Issued ※ 11 December 2023

Cite •

reference for this paper using ※ BibTeX, ※ LaTeX, ※ Text/Word, ※ RIS, ※ EndNote (xml)

THMBCMO10

SECoP Integration for the Ophyd Hardware Abstraction Layer

1212

P. Wegmann, K. Kiefer, O. Mannix, L. Rossa, W. Smith
HZB, Berlin, Germany
E. Faulhaber
MLZ, Garching, Germany
M. Zolliker
PSI, Villigen PSI, Switzerland

At the core of the Bluesky experimental control ecosystem the ophyd hardware abstraction, a consistent high-level interface layer, is extremely powerful for complex device integration. It introduces the device data model to EPICS and eases integration of alien control protocols. This paper focuses on the integration of the Sample Environment Communication Protocol (SECoP)* into the ophyd layer, enabling seamless incorporation of sample environment hardware into beamline experiments at photon and neutron sources. The SECoP integration was designed to have a simple interface and provide plug-and-play functionality while preserving all metadata and structural information about the controlled hardware. Leveraging the self-describing characteristics of SECoP, automatic generation and configuration of ophyd devices is facilitated upon connecting to a Sample Environment Control (SEC) node. This work builds upon a modified SECoP-client provided by the Frappy framework**, intended for programming SEC nodes with a SECoP interface. This paper presents an overview of the architecture and implementation of the ophyd-SECoP integration and includes examples for better understanding.
*Klaus Kiefer et al. "An introduction to SECoP - the sample environment communication protocol".
**Markus Zolliker and Enrico Faulhaber url: https://github.com/sampleenvironment/Frappy.

Slides THMBCMO10 [0.596 MB]

Poster THMBCMO10 [0.809 MB]

DOI •

reference for this paper ※ doi:10.18429/JACoW-ICALEPCS2023-THMBCMO10

About •

Received ※ 05 October 2023 — Accepted ※ 08 December 2023 — Issued ※ 14 December 2023

Cite •

reference for this paper using ※ BibTeX, ※ LaTeX, ※ Text/Word, ※ RIS, ※ EndNote (xml)

THMBCMO18

Advancements in Beamline Digital Twin at BESSYII

1236

S. Vadilonga, G. Günther, S. Kazarski, R. Ovsyannikov, S.S. Sachse, W. Smith
HZB, Berlin, Germany

This presentation reports on the status of beamline digital twins at BESSY II. To provide a comprehensive beamline simulation experience we have leveraged BESSY II’s x-ray tracing program, RAY-UI[*], widely used for beamline design and commissioning and best adapted to the requirements of our soft X-ray source BESSY II. We created a Python API, RayPyNG, capable to convert our library of beamline configuration files produced by RAY-UI into Python objects[**]. This allows to embed beamline simulation into Bluesky[***], our experimental controls software ecosystem. All optical elements are mapped directly into the Bluesky device abstraction (Ophyd). Thus beamline operators can run simulations and operate real systems by a common interface, allowing to directly compare theory predictions with real-time results[****]. We will discuss the relevance of this digital twin for process tuning in terms of enhanced beamline performance and streamlined operations. We will shortly discuss alternatives to RAY-UI like other software packages and ML/AI surrogate models.
[*]https://doi.org/10.1063/1.5084665
[**]https://raypyng.readthedocs.io/
[***]https://doi.org/10.1080/08940886.2019.1608121
[****]https://raypyng-bluesky.readthedocs.io/

Slides THMBCMO18 [0.333 MB]

DOI •

reference for this paper ※ doi:10.18429/JACoW-ICALEPCS2023-THMBCMO18

About •

Received ※ 06 October 2023 — Accepted ※ 11 December 2023 — Issued ※ 16 December 2023

Cite •

reference for this paper using ※ BibTeX, ※ LaTeX, ※ Text/Word, ※ RIS, ※ EndNote (xml)

THMBCMO30

Using ArUco Codes for Beam Spot Analysis with a Camera at an Unknown Position

1264

W. Smith, M. Arce, M. Bär, M. Gorgoi, C.E. Jimenez, I. Rudolph
HZB, Berlin, Germany

Measuring the focus size and position of an X-ray beam at the interaction point in an synchrotron beamline is a critical parameter that is used when planning experiments and when determining if a beamline is achieving it’s design goals. Commonly this is performed using a dedicated UHV "focus chamber" comprising a fluorescent screen at an adjustable calibrated distance from the mounting flange and a camera on the same axis as the beam. Having to install a large piece of hardware makes regular checks prohibitively time consuming. A fluorescent screen can be mounted to a sample holder and moved using a manipulator in the existing end-station and a camera pointed at this to show a warped version of the beam spot at the interaction point. The warping of the image is caused by the relative position of the camera to the screen, which is difficult to determine and can change and come out of camera focus as the manipulator is moved. This paper proposes a solution to this problem using ArUco codes printed onto a fluorescent screen which provide a reference in the image. Reference points from the ArUco codes are recovered from an image and used to correct warping and provide a calibration in real time using an EPICS AreaDetector plugin using OpenCV. This analysis is presently in commissioning and aims to characterise the beam spots at the dual-colour beamline of the EMIL laboratory at BESSY II.

Slides THMBCMO30 [4.674 MB]

Poster THMBCMO30 [0.942 MB]

DOI •

reference for this paper ※ doi:10.18429/JACoW-ICALEPCS2023-THMBCMO30

About •

Received ※ 16 September 2023 — Revised ※ 10 October 2023 — Accepted ※ 13 October 2023 — Issued ※ 22 October 2023

Cite •

reference for this paper using ※ BibTeX, ※ LaTeX, ※ Text/Word, ※ RIS, ※ EndNote (xml)